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Artificial neural networks compared with Bayesian generalized linear regression for leaf rust resistance prediction in Arabica coffee PAB
Silva,Gabi Nunes; Nascimento,Moysés; Sant’Anna,Isabela de Castro; Cruz,Cosme Damião; Caixeta,Eveline Teixeira; Carneiro,Pedro Crescêncio Souza; Rosado,Renato Domiciano Silva; Pestana,Kátia Nogueira; Almeida,Dênia Pires de; Oliveira,Marciane da Silva.
Abstract: The objective of this work was to evaluate the use of artificial neural networks in comparison with Bayesian generalized linear regression to predict leaf rust resistance in Arabica coffee (Coffea arabica). This study used 245 individuals of a F2 population derived from the self-fertilization of the F1 H511-1 hybrid, resulting from a crossing between the susceptible cultivar Catuaí Amarelo IAC 64 (UFV 2148-57) and the resistant parent Híbrido de Timor (UFV 443-03). The 245 individuals were genotyped with 137 markers. Artificial neural networks and Bayesian generalized linear regression analyses were performed. The artificial neural networks were able to identify four important markers belonging to linkage groups that have been recently mapped,...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Coffea arabica; Hemileia vastatrix; Artificial intelligence; Molecular markers; Prediction.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2017000300186
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Genomic prediction of leaf rust resistance to Arabica coffee using machine learning algorithms Scientia Agricola
Sousa,Ithalo Coelho de; Nascimento,Moysés; Silva,Gabi Nunes; Nascimento,Ana Carolina Campana; Cruz,Cosme Damião; Silva,Fabyano Fonseca e; Almeida,Dênia Pires de; Pestana,Kátia Nogueira; Azevedo,Camila Ferreira; Zambolim,Laércio; Caixeta,Eveline Teixeira.
ABSTRACT Genomic selection (GS) emphasizes the simultaneous prediction of the genetic effects of thousands of scattered markers over the genome. Several statistical methodologies have been used in GS for the prediction of genetic merit. In general, such methodologies require certain assumptions about the data, such as the normality of the distribution of phenotypic values. To circumvent the non-normality of phenotypic values, the literature suggests the use of Bayesian Generalized Linear Regression (GBLASSO). Another alternative is the models based on machine learning, represented by methodologies such as Artificial Neural Networks (ANN), Decision Trees (DT) and related possible refinements such as Bagging, Random Forest and Boosting. This study aimed to...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Hemileia vastatrix; Statistical learning; Plant breeding; Artificial intelligence.
Ano: 2021 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162021000401102
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Neural networks for predicting breeding values and genetic gains Scientia Agricola
Silva,Gabi Nunes; Tomaz,Rafael Simões; Sant'Anna,Isabela de Castro; Nascimento,Moysés; Bhering,Leonardo Lopes; Cruz,Cosme Damião.
Analysis using Artificial Neural Networks has been described as an approach in the decision-making process that, although incipient, has been reported as presenting high potential for use in animal and plant breeding. In this study, we introduce the procedure of using the expanded data set for training the network. Wealso proposed using statistical parameters to estimate the breeding value of genotypes in simulated scenarios, in addition to the mean phenotypic value in a feed-forward back propagation multilayer perceptron network. After evaluating artificial neural network configurations, our results showed its superiority to estimates based on linear models, as well as its applicability in the genetic value prediction process. The results further...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Genetic value; Statistics; Simulation; Artificial intelligence; Training strategy.
Ano: 2014 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0103-90162014000600008
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Similarity networks for the classification of rice genotypes as to adaptability and stability PAB
Silva,Gabi Nunes; Silva Júnior,Antônio Carlos da; Sant’Anna,Isabela de Castro; Cruz,Cosme Damião; Nascimento,Moysés; Soares,Plínio César.
Abstract: The objective of this work was to evaluate the similarity network graphic methodology for the classification of flood-irrigated rice (Orzya sativa) genotypes regarding their adaptability and stability. Two statistical measures were used to represent the proximity of the behavior (based on Pearson’s correlation) or values (based on Gower’s distance) between pairs of genotypes or between genotype and environment. Productivity data of 18 genotypes were evaluated in three locations in the state of Minas Gerais, Brazil, in the harvests of 2012/2013, 2013/2014, 2014/2015, and 2015/2016, in a randomized complete block design. The genotypes were previously assessed for adaptability and stability by the Eberhart & Russell and centroid methods. The...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Orzya sativa; Flood-irrigated rice; Genotype x environment interaction; Graphic analysis; Similarity.
Ano: 2020 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2020000102901
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